Perform in silico tryptic digest on uniprot fasta file
Usage
get_ibaq_peptides(fasta_location, miscleaves = 0, enzyme = "trypsin")
Arguments
- fasta_location
Path to fasta file
- miscleaves
Allowed number of miscleavages. Defaults to 0 (standard for iBAQ)
- enzyme
The enzyme used for digestion. Defaults to 'trypsin'. See 'cleaver'
package vignette for more options.
Value
A data frame with the number of theoretically observable peptides for
each entry in the fasta file.
Examples
if (FALSE) { # \dontrun{
no_ibaq_peptides <- get_ibaq_peptides('path/to/fasta.fasta')
} # }