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Find the amino acid locations of peptides within a protein sequence

Source: R/protein_coverage.R
get_peptide_position_in_protein.Rd

Find the amino acid locations of peptides within a protein sequence

Usage

get_peptide_position_in_protein(peptide_sequences, full_sequence)

Arguments

peptide_sequences

A character vector with the peptide sequences.

full_sequence

A character vector with the sequence of the parent protein.

Value

A data frame with the peptide sequences, their start position and end position in the parent protein.

Examples


pep_sequence <- 'AARTGGGPLR'
full_sequence <- 'ISIFQKRSRWCAARTGGGPLRDPEIYLWWW'
positions <- get_peptide_position_in_protein(pep_sequence, full_sequence)