Plots GSEA data as a faceted dot plot showing NES, padj, and set size. — plot_gsea_dotplot • DIANNmv

Plots GSEA data as a faceted dot plot showing NES, padj, and set size.

Usage

plot_gsea_dotplot(
  gsea,
  padj_cutoff = 0.05,
  top_n = Inf,
  remove_prefix = F,
  max_name_length = Inf
)

Arguments

gsea: gsea Output from perform_GSEA.
padj_cutoff: padj_cutoff The maximum p.adjust value allowed for inclusion of the pathway.
top_n: The maximum number of pathways included. Takes the top_n pathways with the lowest p.adj values.
remove_prefix: Boolean specifying to remove the prefix from pathway names.
max_name_length: Numeric value specifying the max length of pathway names.

Value

A ggplot object.

Examples

if (FALSE) { # \dontrun{
gsea <- perform_GSEA(res, genesets)
dotplot <- plot_gsea_dotplot(gsea, top_n = 10)
} # }