Creates individual GSEA enrichment plots for selected pathwways.

Usage

plot_gsea_enrichment_plot(
  genesets,
  pathways,
  res,
  line_color = "green",
  ES_color = "red",
  linewidth = 1,
  ticksSize = 0.2
)

Arguments

genesets: A list with pathways/genesets created with get_genesets.
pathways: A character vector specifying which pathways need to be plotted.
res: Results from get_DEPresults. Requires a 1-vs-1 comparison.
line_color: Character specifying which color the solid line in the plot is.
ES_color: Character specifying which colro the dashed line specifying ES-score in the plot is.
linewidth: Numeric value specifying the thickness of the plotted lines.
ticksSize: Numeric value specifying the thickness of the ticks in lower part graph.

Value

An single or list of ggplot2 objects.

Examples

if (FALSE) { # \dontrun{
db <- load_msigdb()
genesets <- get_genesets(db, 'h')
res <- get_DEPresults(se, 'motif1', 'neg_ctrl')
pathways <- c('HALLMARK_MYC_TARGETS_V1', 'HALLMARK_TGF_BETA_SIGNALING')
enrichment_plots <- plot_gsea_enrichment_plot(genesets, pathways, res)
} # }