Prepares data for the different GSEA visualization options
Source:R/gsea_plots.R
prepare_gsea_data.RdPrepares data for the different GSEA visualization options
Usage
prepare_gsea_data(
gsea,
padj_cutoff = 0.05,
top_n = Inf,
remove_prefix = F,
break_names = T,
max_name_length = Inf
)Arguments
- gsea
Output from perform_GSEA.
- padj_cutoff
The maximum p.adjust value allowed for inclusion of the pathway.
- top_n
The maximum number of pathways included. Takes the top_n pathways with the lowest p.adj values.
- remove_prefix
Boolean specifying to remove the prefix from pathway names.
- break_names
Boolean value that indicates if pathway names should be shown on two lines when the length exceedds the max_name_length parameter
- max_name_length
Numeric value indicating the maximum characters of the pathway names before they are shortened.