Add iBAQ intensities to report.pg_matrix file.

Add iBAQ intensities to report.pg_matrix file.

Usage

add_iBAQ(pg_matrix, pr_matrix, ibaq_stats = NULL, organism = "hs")

Arguments

pg_matrix

The report.pg_matrix file.

pr_matrix

The report.pr_matrix file.

ibaq_stats

Dataframe with proteinIDs and associated number of iBAQ peptides obtained with get_ibaq_peptides. Required when not using pre-calculated iBAQ peptides

organism

Specifies which organism to use if using pre-calculated iBAQ peptides. 'hs' for human, 'mm' for mouse.

Value

A report.pg_matrix data frame with iBAQ columns added.

Examples

pg <- add_iBAQ(report.pg_matrix, report.pr_matrix, organism = 'hs')