Adds median peptide intensities to summerizedExperiment object

Usage

add_median_peptide_intensity(se, pr_matrix)

Arguments

se: SummerizedExperiment object returned from DEP::make_se()
pr_matrix: The report.pr_matrix file

Value

a summerizedExperiment object with peptide intensities as extra assay

Examples


se <- prepare_se(report.pg_matrix, expDesign)

#> Imputing along margin 1 (features/rows).
#> Warning: 36 rows with more than 50 % entries missing;
#>  mean imputation used for these rows
#> Cluster size 5548 broken into 2203 3345 
#> Cluster size 2203 broken into 1569 634 
#> Cluster size 1569 broken into 1504 65 
#> Cluster size 1504 broken into 645 859 
#> Done cluster 645 
#> Done cluster 859 
#> Done cluster 1504 
#> Done cluster 65 
#> Done cluster 1569 
#> Done cluster 634 
#> Done cluster 2203 
#> Cluster size 3345 broken into 2136 1209 
#> Cluster size 2136 broken into 1087 1049 
#> Done cluster 1087 
#> Done cluster 1049 
#> Done cluster 2136 
#> Done cluster 1209 
#> Done cluster 3345 
se <- add_median_peptide_intensity(se, report.pr_matrix)