Adds median peptide intensities to summerizedExperiment object

Adds median peptide intensities to summerizedExperiment object

Usage

add_median_peptide_intensity(se)

Arguments

se

SummerizedExperiment object returned from DEP::make_se()

Value

a summerizedExperiment object with peptide intensities as extra assay

Examples

se <- prepare_se(report.pg_matrix, expDesign, report.pr_matrix)

#> Imputing along margin 2 (samples/columns).
#> [1] 0.3066195
#> Imputing along margin 1 (features/rows).
#> Warning: 36 rows with more than 50 % entries missing;
#>  mean imputation used for these rows
#> Cluster size 5574 broken into 3662 1912 
#> Cluster size 3662 broken into 1462 2200 
#> Done cluster 1462 
#> Cluster size 2200 broken into 1110 1090 
#> Done cluster 1110 
#> Done cluster 1090 
#> Done cluster 2200 
#> Done cluster 3662 
#> Cluster size 1912 broken into 1379 533 
#> Done cluster 1379 
#> Done cluster 533 
#> Done cluster 1912 
se <- add_median_peptide_intensity(se)